PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02549.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 393aa    MW: 45460.8 Da    PI: 4.7381
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02549.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.32.8e-106813352128
                      NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               +++++w+fFs++dkky++g+r++     gyWk  gk    +  + +  +  +      grap ge+tdWvmhey++
  Sme2.5_02549.1_g00007.1  68 LSGDRQWFFFSPKDKKYPNGERSKH----GYWK--GKRSYYYM-QLSCCWSHED----AGRAPVGERTDWVMHEYTM 133
                              46789*************9988765....9***..55444444.2232333322....69***************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510059.8212156IPR003441NAC domain
PfamPF023651.3E-663132IPR003441NAC domain
SuperFamilySSF1019413.66E-1768156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MCGIKEFGKT VNSKSTETKG TWPQMIECCV QRVKSNNLLR LQLRLFLSDS NSTMLSLVKL  60
LTPLMCYLSG DRQWFFFSPK DKKYPNGERS KHGYWKGKRS YYYMQLSCCW SHEDAGRAPV  120
GERTDWVMHE YTMDEEELKR YQNVQDYHAL YKVFKKSSPS PKNCEQYSAP FREEDWIDDE  180
CLNPKDSVEK ESPRLQENSP NPINVVPATD NALEELLNCI GDEPVSSEPH TLDNNFAFEQ  240
FIQEEYTEST LLNQSSREVN LYNHSVVAGP SCHPYKARTS FDLTESDTSP LHLYETPEVS  300
SAPVNTKKPP NMLEEDFLED FLEMDDLLVP EPSVQNFDHQ TSNGQVFDKA AGKLETLQFD  360
AFDGLTEFDL YHDARTGRKF GWCLDIHLFH LLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-116816267171NO APICAL MERISTEM PROTEIN
1ut4_B2e-116816267171NO APICAL MERISTEM PROTEIN
1ut7_A2e-116816267171NO APICAL MERISTEM PROTEIN
1ut7_B2e-116816267171NO APICAL MERISTEM PROTEIN
3swm_A2e-116816270174NAC domain-containing protein 19
3swm_B2e-116816270174NAC domain-containing protein 19
3swm_C2e-116816270174NAC domain-containing protein 19
3swm_D2e-116816270174NAC domain-containing protein 19
3swp_A2e-116816270174NAC domain-containing protein 19
3swp_B2e-116816270174NAC domain-containing protein 19
3swp_C2e-116816270174NAC domain-containing protein 19
3swp_D2e-116816270174NAC domain-containing protein 19
4dul_A2e-116816267171NAC domain-containing protein 19
4dul_B2e-116816267171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4375231e-132KF437523.1 Solanum tuberosum putative membrane bound NAC transcription factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074110.11e-150PREDICTED: NAC domain-containing protein 17-like
TrEMBLM1D2U01e-150M1D2U0_SOLTU; Uncharacterized protein
TrEMBLM1D2U11e-150M1D2U1_SOLTU; Uncharacterized protein
STRINGSolyc04g072220.2.11e-147(Solanum lycopersicum)
STRINGPGSC0003DMT4000799951e-145(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32122451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.12e-42NAC domain containing protein 17